Bioengineered lactobacillus probiotics and the uses thereof

ABSTRACT

The present application relates to an animal feed supplement for improving animal health and meat production compromising Next Generation Bioengineered Probiotics (NGBP). In some embodiments, the present application relates to a method for treating or preventing an inflammatory condition of a patient comprising the step of administering a therapeutically effective amount of Generation Bioengineered Probiotics (NGBP), together with one or more pharmaceutically acceptable carriers, diluents, and excipients, to the patient in need of relief from said inflammatory condition. In some other embodiments, the present invention relates to method for improving animal health and/or meat production comprising the step of adding an effective amount of Next Generation Bioengineered Probiotics (NGBP) to the feed of said animal.

CROSS REFERENCE TO RELATED APPLICATIONS

This present patent application relates to and claims the priority benefit of U.S. Provisional Application Ser. No. 62/692,880, filed Jul. 2, 2018, the content of which is hereby incorporated herein by reference in its entirety

STATEMENT OF SEQUENCE LISTING

A computer-readable form (CRF) of the Sequence Listing is submitted concurrently with this application. The file, generated on Jun. 28, 2019, is entitled Sequence_Listing_68291-02_ST25_txt. Applicant states that the content of the computer-readable form is the same and the information recorded in computer readable form is identical to the written sequence listing.

TECHNICAL FIELD

The present application relates to a method for treating or preventing an inflammatory condition of a patient comprising the step of administering a therapeutically effective amount of Next Generation Bioengineered Probiotics (NGBP), together with one or more pharmaceutically acceptable carriers, diluents, and excipients, to the patient in need of relief from said inflammatory condition. In some other embodiments, the present invention relates to method for improving animal health and/or meat production comprising the step of adding an effective amount of Next Generation Bioengineered Probiotics (NGBP) to the feed of said animal.

BACKGROUND

This section introduces aspects that may help facilitate a better understanding of the disclosure. Accordingly, these statements are to be read in this light and are not to be understood as admissions about what is or is not prior art.

Listeria monocytogenes is an opportunistic human foodborne pathogen responsible for severe systemic infection (listeriosis), and abortion, stillbirth and premature birth in pregnant women, mortality in newborns, the elderly and other immunocompromised individuals. L. monocytogenes is well adapted to survive in the harsh environment of the gut (Sleator et al., 2009; Xayarath and Freitag, 2012). For the systemic spread, L. monocytogenes overcomes intestinal epithelial innate defense (Vance et al., 2009) and crosses the epithelial barrier. M cells overlying Peyer's patches (Marco et al., 1997; Pron et al., 1998) and Internalin A (InlA)-mediated pathways are considered common events for epithelial barrier crossing. InlA interacts with the host cell receptor E-cadherin for intracellular spread (Lecuit et al., 2001); however, it is located at the basolateral side of the epithelial adherens junction (AJ) and is inaccessible to luminal L. monocytogenes. It is proposed that E-cadherin exposed during villous epithelial cell extrusion (Pentecost et al., 2006) and mucus exocytosis (Nikitas et al., 2011), can interact with Listeria InlA. InlA/E-cadherin interaction is host species-specific. In mouse E-cadherin, proline is substituted by glutamic acid at the amino acid sequence position 16, thus InlA has low affinity for mouse or rat E-cadherin but has a strong interaction with the E-cadherin of permissive hosts, such as humans, gerbils and guinea pigs (Lecuit et al., 1999). Studies using transgenic mice expressing “humanized” E-cadherin (Disson et al., 2008) or murinized InlA (InlAm) (Bou Ghanem et al., 2012; Wollert et al., 2007) have indicated that L. monocytogenes may use alternate routes to translocate across the gut mucosa. We recently showed that L. monocytogenes, uses Listeria adhesion protein (LAP) to cross the intestinal epithelium by inducing epithelial barrier dysfunction by activating NF-kB and MLCK, in the absence of InlA, in epithelial cell and mouse models (Burkholder and Bhunia, 2010; Drolia et al., 2018). In mice, the bacterium is found in the epithelial lamina propria, mesenteric lymph nodes (MLN), blood, liver, spleen, and kidneys.

LAP (866 aa) is a housekeeping alcohol acetaldehyde dehydrogenase (Jagadeesan et al., 2010) in L. monocytogenes and displays moonlighting activity (See below and Sequence Listing for details). It interacts with the host cell Hsp60 (Wampler et al., 2004), a mammalian moonlight chaperone protein (Henderson et al., 2013), activates NF-kB leading to the proinflammatory cytokines release, myosin light chain kinase (MLCK) upregulation and epithelial tight junction protein mislocalization (claudin-1, occludin and E-cadherin), leading to a leaky epithelial barrier for bacterial passage (Drolia et al., 2018).

LAP protein sequence from Listeria monocytogenes 1 maikenaaqe vlevqkvidr ladngqkalk afesynqeqv dnivhamala gldqhmplak 61 laveetgrgl yedkciknif ateyiwnnik nnktvgvine dvqtgvieia epvgvvagvt 121 pvtnptsttl fkaiiaiktr npiifafhps aqrcssaaak vvydaaiaag apehciqwve 181 kpsleatkql mnhdkvalvl atggagmvks aystgkpalg vgpgnvpayi dktakikrsv 241 ndiilsksfd qgmicaseqa vivdkevake vkaemeankc yfvkgaefkk lesyvinpek 301 gtlnpdvvgk spawianqag fkvpedtkil vaeikgvgdk yplsheklsp vlafieaanq 361 aeafdrceem lvygglghsa vihstdkevq kafgirmkac riivnapsaq ggigdiyngf 421 ipsltlgcgs ygknsvsqnv satnllnvkr iadrrnnmqw fklppkiffe kystqylqkm 481 egvervfivt dpgmgsfkyv dvviehlkkr gndvayqvfa dvepdpsdvt vykgaelmkd 541 fkpdtiialg ggsamdaakg mwlfyehpea sffglkqkfl dirkrtfkyp klggkakfva 601 ipttsgtgse vtpfavitdk ennikyplad yeltpdvaiv daqyvttvpa hitadtgmdv 661 ithaiesyvs vmasdytrgl siraielvfe nlresvltgd pdarekmhna salagmafan 721 aflginhsla hkigpefhip hgranailmp hvirynalkp kkhalfprye sfradedyar 781 isriigfpaa tteegvkslv deiiklgkdv gidmslkgqn vakkdldavv dtladrafmd 841 gcttanpkqp lvselkeiyl eaykgv LAP protein sequence from Listeria innocua 1 maikenaaqe vlevqkvidr ladngqkalk afesynqeqv dnivhamala gldqhmplak 61 laveetgrgl yedkciknif ateyiwnnik nnktvgvine dtqtgvieia epvgvvagvt 121 pvtnptsttl fkaiiaiktr npiifafhps aqrcsseaak vvydaavaag apehciqwve 181 kpsleatkql mnhdkvalvl atggagmvks aystgkpalg vgpgnvpayi dktakikrsv 241 ndiilsksfd qgmicaseqa vivdkevake vkaemeankc yfvkgaefkk lesyvinpek 301 gtlnpdvvgk spawianqag fkvpedtkil vaeikgvgdk yplsheklsp vlafieaatq 361 aeafdrceem lvygglghsa vihstdkevq kafgirmkac riivnapsaq ggigdiyngf 421 ipsltlgcgs ygknsvsqnv satnllnvkr iadrrnnmqw fklppkiffe kystgylqkm 481 egvervfivt dpgmvqfkyv dvviehlkkr gndvayqvfa dvepdpsdvt vykgaelmkd 541 fkpdtiialg ggsamdaakg mwlfyehpea sffglkqkfl dirkrtfkyp klggkakfva 601 ipttsgtgse vtpfavitdk ennikyplad yeltpdvaiv daqyvttvpa hitadtgmdv 661 lthaiesyvs vmasdytrgl siraielvfe nlresvltgd pdarekmhna salagmafan 721 aflginhsla hkigpefhip hgranailmp hvirynalkp kkhalfprye sfradedyar 781 isriigfpaa tteegvkslv deiiklgkdv gidmslkgqn vakkdldavv dtladrafmd 841 gcttanpkgp lvselkeiyl eaykgv

The gut mucosa represents the first site for the dynamic interaction of the enteric pathogens with the host (Finlay and Falkow, 1997). Therefore, averting this critical pathogen interaction step should help prevent extra-intestinal dissemination of pathogens and the consequent pathology. Live probiotics bacteria such as lactobacilli and bifidobacteria are known to colonize and proliferate in the intestine to improve intestinal microbial balance and protect the host from pathogens (Cross, 2002; Salminen et al., 2010). Among the different probiotic bacteria used, Lactobacillus species are common because they are natural inhabitants of the gut, modulate immune system (Amalaradjou and Bhunia, 2012; Sanders et al., 2014), and enhance epithelial innate defense and restore epithelial barrier function (Bron et al., 2017; Pagnini et al., 2010).

One of the major drawbacks of probiotics for prophylactic or therapeutic use is that the antimicrobial effect is inconsistent and may be strain specific (Hill et al., 2014) thus may have limited efficacy against a target pathogen. Therefore, there are unmet needs in using probiotic bacteria to prevent pathogen interactions with the host (Amalaradjou and Bhunia, 2013; Focareta et al., 2006; Michon et al., 2016; Mohamadzadeh et al., 2010).

BRIEF DESCRIPTION OF THE DRAWINGS

The above and other objects, features, and advantages of the present invention will become more apparent when taken in conjunction with the following description and drawings wherein identical reference numerals have been used, where possible, to designate identical features that are common to the figures, and wherein:

FIGS. 1A-1D demonstrates that Listeria Adhesion Protein (LAP) from Listeria innocua restored adhesion and translocation ability of the lap-deficient L. monocytogenes (KB208) to enterocytes. FIG. 1A shows amino acid sequence comparison of LAP from L. monocytogenes and L. innocua. FIG. 1B shows Western blot analysis of protein preparation from cell wall showing expression of L. innocua LAP in L. monocytogenes KB208 (KB208LAP^(Lin)). FIG. 1C shows adhesion of KB208LAP^(Lin) to Caco-2 cells FIG. 1D shows translocation of KB208LAP^(Lin) across Caco-2 cells. Data represent three experiments ran in duplicate. *, P=0.05, **, P=0.001; ***, P=0.0001, ns=not significant.

FIGS. 2A-2F show bioengineered Lactobacillus Probiotic (BLP) expressing LAP (Listeria adhesion protein) of L. innocua reduced L. monocytogenes infection in Caco-2 model. FIG. 2A shows the analysis of LAP expression in bioengineered L. casei: Western blot showing LAP expression in cell wall fractions of L. casei expressing LAP of L. monocytogenes (LbcLAP^(Lm)), and L. innocua (LbcLAP^(Lm)). Purified recombinant LAP of L. monocytogenes (rLAP^(Lm)) was used as a positive control. FIG. 2B shows translocation of bioengineererd probiotics across Caco-2 cells. FIG. 2C shows inhibition of L. monocytogenes adhesion; and FIG. 2D shows transepithelial translocation of Listeria monocytogenes (Lm) on Caco-2 cell line treated with L. casei (Lbc) and LbcLAP^(Lm), LbcLAP^(Lm), and L. casei carrying empty plasmid vector, pLP401T without any insert (LbcVeclap−).

FIGS. 3A-3H show characterization of bioengineered probiotic strains. FIGS. 3A-3B show immunofluorescence staining and flow cytometry using anti-LAP mAb-H7 to verify LAP expression on bioengineered probiotics bacteria. FIG. 3C depicts the absence of bacteriocin-like antimicrobial activity in LbcWT and bioengineered strains (LbcLAP^(Lin); LbcLAP^(Lm)) against L. monocytogenes lawn. Pediocin (a bacteriocin from Pediococcus acidilactici), and vancomycin were used as positive controls showing a zone of inhibition. FIGS. 3D-3F show survival of bioengineered L. casei (LbcLAP^(Lin); LbcLAP^(Lm)) and LbcWT in simulated gastric fluid (SGF) (3D), simulated intestinal fluid I (SGF-I) (3E), and simulated intestinal fluid II (SGF-II) (3F). FIG. 3G shows the light microscopic photographs showing the live and dead stained bioengineered LbcLAP^(Lin) strain using cFDA-SE (carboxyfluorescein diacetate succinimidyl ester) and PI (propidium iodide) after exposure to simulated gastric fluid (SGF) and simulated intestinal fluid (SIF) for 2.5 h. FIG. 3H confirms LAP expression in bioengineered probiotics (LbcLAP^(Lin); LbcLAP^(Lm)), but absent in LbcWT when grown SIF-I.

FIGS. 4A-4K demonstrate that bioengineered Lactobacillus casei reduced L. monocytogenes infection in a mouse (A/J) model. FIG. 4A is a schematics showing animal experiment protocol: mice (female A/J mice, 6 weeks old) were fed probiotics for 10 days, and then challenged with L. monocytogenes F4244 (8.8×10⁸ cfu/animal). FIG. 4B Mice body weight analysis over 12-days period during probiotic feeding and challenge with L. monocytogenes (Lm) at time points 0, 5, 10, and 12 days. FIGS. 4C-4D show analysis of bioengineered Lbc colonization in the mouse gut: (4C) Total lactic acid bacterial counts in animals that were fed with different bioengineered Lbc or controls on MRS agar plate and vancomycin resistant LbcWT, LbcLAP^(Lin); LbcLAP^(Lm) (4D) in the intestine and feces during 10 days of feeding. Wild type and bioengineered probiotic counts in the intestine and fecal samples of mice from day 13. MRS containing vancomycin (300 μg/ml) was used to isolate LbcWT (n=15 mice) and MRS containing erythromycin (2 μg/ml) was used to enumerate bioengineered probiotics, LbcLAP^(Lm) (n=15) and LbcLAP^(Lm) (n=15). As expected, no antibiotic resistant probiotics were detected from control animals or control animals that received L. monocytogenes (Lm) only.

FIGS. 4E-4K depict mice experiments showing bioengineered probiotic mediated prevention of L. monocytogenes infection. L. monocytogenes counts in probiotic fed mice in (4E) liver, (4F) spleen, (4G) MLN, (4H) kidney, (4I) blood, (4J) intestine, and (4K) feces after 24 h or 48 h post infection. (n=6-10 mice). Each animal was represented by a dot in the plot (n=3-10 mice per group). Horizontal dotted lines indicate detection limit of the assay. Treatments were, wild type L. casei (LbcWT), bioengineered L. casei expressing LAP of L. monocytogenes (LbcLAP^(Lm)) and L. innocua (LbcLAP^(Lin)). No background Listeria was detected from mice that received only the probiotics (LbcWT, LbcLAPLm, LbcLAPLin) or no probiotics at all. Data were analyzed by Man Whitney test using GraphPad Prism 6. (*, P=0.05, **, P=0.001; ***, P=0.0001, ns=not significant).

FIG. 5 shows visual examination of health status of mice after challenged with L. monocytogenes. The animals in the left panels (a,c,e,g) were not challenged (control), while the right panels (b,d,f,h) were challenged with L. monocytogenes F4244. The clinical onset of listeriosis in (b) No Lbc+Lm and (d) LbcWT+Lm was evident. LbcLAP^(Lin)+Lm mice appeared healthy.

FIGS. 6A-6D demonstrate epithelial permeability assessment after probiotic exposure. FIGS. 6A-6B show epithelial permeability in Caco-2 cell monolayers in transwell insert using 4 kDa FITC-Dextran (FD4) (a) movement from apical to basolateral side and Transepithelial electrical resistance (TEER) (b) after treatment with Control, L. monocytogenes (Lm), No Lbc+Lm, LbcWT, LbcWT+Lm, LbcLAP^(Lm), LbcLAP^(Lm)+Lm, LbcLAP^(Lm), LbcLAP^(Lin)+Lm. FIGS. 6A-6B show intestinal epithelial permeability assessment by measuring FD4 levels in serum (6C) and urine (6D) in probiotic fed mice from FIGS. 4A-4K. Treatments were, control, No Lbc+Lm, LbcWT, LbcWT+Lm, LbcLAP^(Lm), LbcLAP^(Lm)+Lm, LbcLAP^(Lin), LbcLAP^(Lm)+Lm. Bioengineered probiotics significantly reduced the FD4 translocation compared to the LbcWT or Lm alone. (***, P<0.0001; *, P<0.05, ns, not significant).

FIGS. 7A-7C show cellular junctional protein distribution analysis in Caco-2 and ileal tissue of mice. FIG. 7A shows Western blot showing tight junction (ZO-1, occludin, claudin-1) and adherence junction protein (E-cadherin) levels in cells after treatment with L. monocytogenes or probiotic bacteria followed by L. monocytogenes challenge. Confirmation of cell-junction protein mislocalization by confocal immunofluorescence microscopy in Caco-2 cells (7B) and in mouse ileal tissue section (7C). White arrows (presence) and yellow (absence or mislocalization) pointing to the cell junction proteins.

FIGS. 8A-8E show histopathological scoring of ileal tissues of bioengineered probiotic-fed mice. (8A) H&E stained sections, (8B) Histology score, (8C & 8D) Increased goblet cell counts in bioengineered probiotic-fed mice ileal tissues. (8E) Immunostaining of tissue sections for Hsp60 expression, (8F) analysis of transcripts of hspd1 (hsp60) in ileal tissues in probiotic fed mice. Treatments were, control, No Lbc+Lm, LbcWT, LbcWT+Lm, LbcLAP^(Lm), LbcLAP^(Lm)+Lm, LbcLAP^(Lm), LbcLAP^(Lm)+Lm. (8E & 8F) In the presence of L. monocytogenes, epithelial cells expressed a high level of Hsp60 irrespective of probiotic treatment. Data were analyzed by one way ANOVA, and Tukey's grouping was used to determine statistical significance at ***, P<0.0001; *, P<0.05, ns, not significant).

FIGS. 9A-9I show immunomodulatory and anti-inflammatory effects of probiotics in RAW macrophage cell line and in mice. (9A & 9B) Attenuation of NF-kB expression in the luciferase reporter RAW cell line (a) and mouse ileum (b). Confocal imaging shows attenuation of NF-kB activity by probiotics compared to Lm WT (b). (9C & 9D) TNF-α and IL-6 expression in mice ilea after probiotic exposure. (9E-9G) Flow cytometry analysis showing spleen CD4 cell levels were unaffected while CD8 and CD11c cell levels were increased after challenged with probiotics followed by Lm challenge. (9H) Spleen cytology score and (9I) light microscopic imaging showed an increased inflammatory response in characterized by infiltration of neutrophils, macrophages, and lymphocytes, and blinded cytology score to probiotic pre-exposure followed by L. monocytogenes infection. Treatments were, control, No Lbc+Lm, LbcWT, LbcWT+Lm, LbcLAP^(Lm), LbcLAP^(Lm)+Lm, LbcLAP^(Lm), LbcLAP^(Lin)+Lm. (n=3-10 mice/group). Two-way ANOVA and one-tailed T-tests of individual probiotic treatment pairs were used to demonstrates a significance at P<0.05.

FIGS. 10A-10D. Immunomodulatory action of probiotics expressing the LAP protein: Ileum harvested from A/J mice supplied with or without probiotics for ten days followed by 48 h-post infection with L. monocytogenes was immunostained for CD3 (10A), CD8α (10B), Fox-P3(10C), and cleaved caspase-3 (10D, CC-3; marker of apoptosis. Graphs show CD3⁺, CD8α⁺, CC-3⁺ and CD4⁺ Fox-P3+, cells from 25 villi/mouse. Each point represents an individual mouse. Mice fed with probiotics expressing the LAP protein (LbcLAP^(Lm) or LbcLAP^(Lin)) prior to L. monocytogenes infection show significantly reduced CD3⁺, CD8⁺ (arrows), CC-3+ cells but significantly increased CD4⁺ Foxp3⁺ cells.

FIG. 11 shows survival of mice (A/J strain) supplied with or without probiotics for ten days in drinking water followed by oral infection with L. monocytogens (n=at least 10 per group). Mice fed with Lactobacillus casei (probiotics) expressing the LAP protein (LbcLAP^(Lin)) showed significantly (**P<0.01, Kaplan-Meier log-rank test) higher survival compared to that of LbcWT.

DETAILED DESCRIPTION

For the purposes of promoting an understanding of the principles of the present disclosure, reference will now be made to the embodiments illustrated in the drawings, and specific language will be used to describe the same. It will nevertheless be understood that no limitation of the scope of this disclosure is thereby intended.

In the present disclosure the term “about” can allow for a degree of variability in a value or range, for example, within 10%, within 5%, or within 1% of a stated value or of a stated limit of a range.

In the present disclosure the term “substantially” can allow for a degree of variability in a value or range, for example, within 70%, within 80%, within 90%, within 95%, or within 99% of a stated value or of a stated limit of a range.

The term “patient” includes human and non-human animals such as companion animals (dogs and cats and the like) and livestock animals. Livestock animals are animals raised for food production. The patient to be treated is preferably a mammal, in particular a human being.

The term “pharmaceutically acceptable carrier” is art-recognized and refers to a pharmaceutically-acceptable material, composition or vehicle, such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material, involved in carrying or transporting any subject composition or component thereof. Each carrier must be “acceptable” in the sense of being compatible with the subject composition and its components and not injurious to the patient. Some examples of materials which may serve as pharmaceutically acceptable carriers include: (1) sugars, such as lactose, glucose and sucrose; (2) starches, such as corn starch and potato starch; (3) cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; (4) powdered tragacanth; (5) malt; (6) gelatin; (7) talc; (8) excipients, such as cocoa butter and suppository waxes; (9) oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean oil; (10) glycols, such as propylene glycol; (11) polyols, such as glycerin, sorbitol, mannitol and polyethylene glycol; (12) esters, such as ethyl oleate and ethyl laurate; (13) agar; (14) buffering agents, such as magnesium hydroxide and aluminum hydroxide; (15) alginic acid; (16) pyrogen-free water; (17) isotonic saline; (18) Ringer's solution; (19) ethyl alcohol; (20) phosphate buffer solutions; and (21) other non-toxic compatible substances employed in pharmaceutical formulations.

As used herein, the term “administering” includes all means of introducing the compounds and compositions described herein to the patient, including, but are not limited to, oral (po), intravenous (iv), intramuscular (im), subcutaneous (sc), transdermal, inhalation, buccal, ocular, sublingual, vaginal, rectal, and the like. The compounds and compositions described herein may be administered in unit dosage forms and/or formulations containing conventional nontoxic pharmaceutically acceptable carriers, adjuvants, and vehicles.

It is to be understood that the total daily usage of the compounds and compositions described herein may be decided by the attending physician within the scope of sound medical judgment. The specific therapeutically effective dose level for any particular patient will depend upon a variety of factors, including the disorder being treated and the severity of the disorder; activity of the specific compound employed; the specific composition employed; the age, body weight, general health, gender, and diet of the patient: the time of administration, and rate of excretion of the specific compound employed, the duration of the treatment, the drugs used in combination or coincidentally with the specific compound employed; and like factors well known to the researcher, veterinarian, medical doctor or other clinician of ordinary skill.

Depending upon the route of administration, a wide range of permissible dosages are contemplated herein, including doses falling in the range from about 1 μg/kg to about 1 g/kg. The dosage may be single or divided, and may be administered according to a wide variety of dosing protocols, including q.d., b.i.d., t.i.d., or even every other day, once a week, once a month, and the like. In each case the therapeutically effective amount described herein corresponds to the instance of administration, or alternatively to the total daily, weekly, or monthly dose.

As used herein, the term “therapeutically effective amount” refers to that amount of active compound or pharmaceutical agent that elicits the biological or medicinal response in a tissue system, animal or human that is being sought by a researcher, veterinarian, medical doctor or other clinicians, which includes alleviation of the symptoms of the disease or disorder being treated. In one aspect, the therapeutically effective amount is that which may treat or alleviate the disease or symptoms of the disease at a reasonable benefit/risk ratio applicable to any medical treatment.

As used herein, the term “therapeutically effective amount” refers to the amount to be administered to a patient, and may be based on body surface area, patient weight, and/or patient condition. In addition, it is appreciated that there is an interrelationship of dosages determined for humans and those dosages determined for animals, including test animals (illustratively based on milligrams per meter squared of body surface) as described by Freireich, E. J., et al., Cancer Chemother. Rep. 1966, 50 (4), 219, the disclosure of which is incorporated herein by reference. Body surface area may be approximately determined from patient height and weight (see, e.g., Scientific Tables, Geigy Pharmaceuticals, Ardley, N.Y., pages 537-538 (1970)). It is appreciated that effective doses may also vary depending on the route of administration, optional excipient usage, and the possibility of co-usage of the compound with other conventional and non-conventional therapeutic treatments, including other anti-tumor agents, radiation therapy, and the like.

As used herein, a patient may be an animal or a human being.

Probiotic:

The International Scientific Association of Probiotics and Prebiotics (ISAPP) in 2014 defined probiotics as “live microorganisms that, when administered in adequate amounts, confer a health benefit on the host” (Hill et al. Nat Rev Gastroenterol Hepatol 11.8 (2014): 506-514).

Next Generation Probiotics (NGPs):

Conform to the normal definition of a probiotic, when administered in adequate amounts, confer a health benefit on the host and is applicable to the prevention, treatment, or cure of a disease or condition of human beings (O′ Tolle et al. Nature microbiology 2.5 (2017): 17057; Langella et al. Frontiers in Microbiology 10 (2019): 1047).

Next Generation Bioengineered Probiotics (NGBPs):

Conform to the normal definition of NGPs, but are genetically modified probiotic strains to exclusively target a specific pathogen, toxin or disease conditions and can be used for a therapeutic purpose (Amalaradjou et al Bioengineered 4.6 (2013): 379-387; Hill et al. Nat Rev Gastroenterol Hepatol 11.8 (2014): 506-514).

In some illustrative embodiments, the present invention relates to a method for improving animal health and/or meat production comprising the step of adding an effective amount of Next Generation Bioengineered Probiotics (NGBP) to the feed of said animal.

In some illustrative embodiments, the present invention relates to a method for improving animal health and/or meat production comprising the step of adding an effective amount of Next Generation Bioengineered Probiotics (NGBP) to the feed of said animal as disclosed herein, wherein said animal is selected from the group consisting of pig, sheep, goat, chicken, turkey, cat, dog, and cattle.

In some illustrative embodiments, the present invention relates to a method for improving animal health and/or meat production comprising the step of adding an effective amount of Next Generation Bioengineered Probiotics (NGBP) to the feed of said animal as disclosed herein, wherein said NGBP is a reengineered bacteria expressing Listeria adhesion protein (LAP).

In some illustrative embodiments, the present invention relates to a method for improving animal health and/or meat production comprising the step of adding an effective amount of Next Generation Bioengineered Probiotics (NGBP) to the feed of said animal as disclosed herein, wherein said NGBP is a lyophilized product.

In some other illustrative embodiments, the present invention relates to an animal feed supplement for improving animal health and meat production compromising Next Generation Bioengineered Probiotics (NGBP).

In some illustrative embodiments, the present invention relates to an animal feed supplement for improving animal health and meat production compromising Next Generation Bioengineered Probiotics (NGBP) as disclosed herein, wherein said NGBP is a reengineered bacteria expressing Listeria adhesion protein (LAP).

In some illustrative embodiments, the present invention relates to an animal feed supplement for improving animal health and meat production compromising Next Generation Bioengineered Probiotics (NGBP) as disclosed herein, wherein said animal feed supplement is a lyophilized product.

In some illustrative embodiments, the present invention relates to an animal feed supplement for improving animal health and meat production compromising Next Generation Bioengineered Probiotics (NGBP) as disclosed herein, wherein said animal is selected from the group consisting of pig, sheep, goat, chicken, turkey, cat, dog, and cattle.

Yet in some other embodiments, the present invention relates to a method to reduce or eliminate antibiotics used in an animal feed for improving animal health and meat production comprising the step of adding an effective amount of Next Generation Bioengineered Probiotics (NGBP) to the feed.

In some other embodiments, the present invention relates to a method to reduce or eliminate antibiotics used in an animal feed for improving animal health and meat production comprising the step of adding an effective amount of Next Generation Bioengineered Probiotics (NGBP) to the feed as disclosed herein, wherein said animal is selected from the group consisting of pig, sheep, goat, chicken, turkey, cat, dog, and cattle.

In some other embodiments, the present invention relates to a method to reduce or eliminate antibiotics used in an animal feed for improving animal health and meat production comprising the step of adding an effective amount of Next Generation Bioengineered Probiotics (NGBP) to the feed as disclosed herein, wherein said NGBP is a reengineered bacteria expressing Listeria adhesion protein (LAP).

In some other embodiments, the present invention relates to a method for treating or preventing an inflammatory condition of a patient comprising the step of administering a therapeutically effective amount of Next Generation Bioengineered Probiotics (NGBP), together with one or more pharmaceutically acceptable carriers, diluents, and excipients, to the patient in need of relief from said inflammatory condition.

In some other embodiments, the present invention relates to a method for treating or preventing an inflammatory condition of a patient comprising the step of administering a therapeutically effective amount of Next Generation Bioengineered Probiotics (NGBP), together with one or more pharmaceutically acceptable carriers, diluents, and excipients, to the patient in need of relief from said inflammatory condition as disclosed herein, wherein said inflammatory condition comprises Crohn's disease (CD), inflammatory Bowel Disease (IBD), and ulcerative colitis (US), wherein intestinal mucosal cells express a high level of Hsp60.

In some other embodiments, the present invention relates to a method for treating or preventing an inflammatory condition of a patient comprising the step of administering a therapeutically effective amount of Next Generation Bioengineered Probiotics (NGBP), together with one or more pharmaceutically acceptable carriers, diluents, and excipients, to the patient in need of relief from said inflammatory condition as disclosed herein, wherein said NGBP is a reengineered bacteria expressing Listeria adhesion protein (LAP).

In some other embodiments, the present invention relates to a method for treating or preventing an inflammatory condition of a patient comprising the step of administering a therapeutically effective amount of Next Generation Bioengineered Probiotics (NGBP), together with one or more pharmaceutically acceptable carriers, diluents, and excipients, to the patient in need of relief from said inflammatory condition as disclosed herein, wherein NGBP is administered orally.

Here, we investigated whether a probiotic bacterium expressing LAP can competitively exclude pathogen interaction on the host epithelial cell, thereby preventing listeriosis in a high-risk population in the background of the probiotic's natural beneficial attributes. In a previous study, as a proof of concept, we showed that LAP of L. monocytogenes expressed on Lactobacillus paracasei was able to reduce L. monocytogenes interaction with the enterocyte-like Caco-2 cell model, however, its effectiveness in an animal model and the host response are unknown. Here, we investigated if the LAP especially from a non-pathogenic Listeria (L. innocua), can be used on a more commonly used probiotic strain, Lactobacillus casei to competitively exclude pathogen interaction in a mouse model. Here, we show that Lactobacillus casei expressing LAP from a nonpathogenic bacterium, L. innocua, supplied to mice (A/J) in drinking water for 10 days, and subsequently challenged with L. monocytogenes was able to protect mice from listeriosis. This probiotic also significantly reduced L. monocytogenes burden in the extra-intestinal tissues, modulated proinflammatory cytokines levels, dampened NF-kB activity, and improved epithelial innate defense and barrier function to protect mice from the infection.

Potential benefits of “Next Generation Bioengineered Probiotics (NGBP)” expressing Listeria adhesion protein (LAP) from a nonpathogenic Listeria (L. innocua) that binds to a mammalian cell receptor, Hsp60 on human health:

-   -   Probiotics, in general, have positive effects on the gut via         their expression of antimicrobial agents, their colonization of         niches that might otherwise be occupied by pathogenic bacteria,         modulating cytokine levels, and their effects on the gut immune         system. Overall, these effects are anti-inflammatory.     -   A key ‘receptor’ for LAP is Hsp60, which is involved in both         chaperoning and immune system function. At low levels, Hsp60 is         anti-inflammatory, but at higher concentrations, it can take on         pro-inflammatory roles.     -   In many chronic inflammatory disease conditions such as Crohn's         Disease (CD), Inflammatory Bowel Disease (IBD), and Ulcerative         Colitis (UC), intestinal mucosal cells express a high level of         Hsp60.     -   Inflammatory disease disrupts gut barrier function thus gut         becomes leaky allowing luminal microbes and endotoxins to enter         blood circulation. NGBP through its interaction with Hsp60 can         maintain epithelial barrier integrity thus prevent endotoxin         from crossing gut epithelial barrier—thus maintain a gut health.     -   Targeting innate or exogenous microbe-induced Hsp60 in mucosal         cells with LAP-expressing NGBP may usefully repress inflammatory         processes in the gut, as well as some types of infectious         processes.         -   LAP-expressing NGBP localization and persistence in the gut             is also enhanced because of their interaction with mucosal             Hsp60.     -   LAP-expressing NGBP also prevents Listeria monocytogenes         colonization and systemic spread and provides protection against         severe disease as confirmed in a mouse model.     -   The LAP-expressing NGBP, by virtue of its Hsp60 targeting,         uniquely addresses stabilization of the gut to inflammatory and         microbiological challenges, as demonstrated in mouse studies.

On the other hand, meat animals such as swine encounters various stressful situations throughout their life. Early in life, weaning, food and water deprivation during transportation and heat are common stressors. Stressors can reduce feed intake, exert inflammatory response, and based on the severity, the stressors can affect gut health by disrupting epithelial barrier function thus making the gut a “leaky gut.” A leaky gut permits increased leakage of luminal commensal bacterial endotoxins (LPS, peptidoglycan) or pathogens into the submucosal location resulting in increased inflammatory cytokine secretion (TNFα, IL-6, TGFβ, IL-8, etc) from intestinal epithelial cells and immune cells. Nutritional deprivation also severely impairs gut function including reduced mucus secretion, and shortened villi height and crypt depth. Thermal stress can damage the intestinal epithelium and elicit enterocyte membrane damage or death alters villus/crypt structure, impairs tight junction integrity and increases endotoxin levels in the blood. Epithelial cells exposed to stress have shown increased Hsp60 expression. Altogether, stressors affect growth performance and make animals susceptible to various infectious agents with a huge financial loss to the farmers. Antibiotics are often used in feed to control infections and to enhance growth performance; however, concerns for the onset of antibiotics resistance require an alternative approach.

Potential benefits of “Next Generation Bioengineered Probiotics (NGBP)” expressing Listeria adhesion protein (LAP) from a nonpathogenic Listeria (L. innocua) that binds to a mammalian cell receptor, Hsp60 on animal health:

-   -   LAP-expressing NGBP can be used as a feed supplement to help         improve gut health by increased colonization of probiotics by         specifically interacting with mucosal Hsp60.     -   NGBP can improve gut barrier function by exerting         anti-inflammatory response     -   Generally, probiotics are most effective when normal intestinal         homeostasis is perturbed, particularly during periods of stress.         Here NGBP with increased interaction with stressed mucosal cells         would be very effective in maintaining intestinal homeostasis.     -   Because of anti-inflammatory and anti-microbial response of         NGBP, antibiotics use in feed can be reduced or eliminated.     -   NGBP mediated improved gut health can also enhance growth         performance and body weight.

The present invention may be better understood in light of the following non-limiting compound examples and method examples.

LAP from Listeria innocua (Non-Pathogen) Restored Adhesion and Epithelial Translocation Ability of the Lap-Deficient L. monocytogenes Strain to Enterocytes.

LAP from pathogenic Listeria (i.e., L. monocytogenes) shares 99.3% amino acid sequence with the LAP from a nonpathogenic Listeria (L. innocua) (Bailey et al., 2017; Jagadeesan et al., 2010) (FIG. 1A). It is proposed that extracellular secreted LAP in the pathogen, re-associates on the surface of the bacterium to aid in bacterial adhesion and translocation across the epithelial barrier (Jagadeesan et al., 2010). However, in L. innocua, LAP does not aid in adhesion to the intestinal epithelial cells possibly due to a defect in re-association of the protein on the surface of this bacterium (Burkholder et al., 2009; Jagadeesan et al., 2010). Here, we show that the lap of L. innocua strain F4248, cloned and expressed in the lap-deficient L. monocytogenes mutant strain (KB208LAP^(Lin)) (FIG. 1B) restored its adhesion to (FIG. 1D), and translocation across (FIG. 1E) the Caco-2 cell monolayers at levels similar to that of a lap-mutant strain expressing LAP of L. monocytogenes (KB208LAP^(Lm)), or the L. monocytogenes WT (F4244, serovar 4b). These data provide a strong indication that LAP from L. innocua has similar adhesion characteristics as the L. monocytogenes WT strain.

Lactobacillus casei Expressing LAP of L. innocua Reduced L. monocytogenes Infection in Caco-2 Cell and a Mouse Model.

The lap ORF (2.6 kb) from both L. innocua and L. monocytogenes was cloned separately into a Lactobacillus expression vector, pLP401T (Koo et al., 2012; Maassen et al., 1999), and the proteins were expressed on the wild-type probiotic Lactobacillus casei ATCC344 (LbcWT) and designated LbcLAP^(Lin) and LbcLAP^(Lm), respectively. LAP expression in both bioengineered Lactobacillus probiotics (BLP) strains was confirmed by immunoblotting (FIG. 2A), immunofluorescence staining and flow cytometry (FIGS. 3A, 3B) using anti-LAP mAb. LAP induces epithelial barrier dysfunction and promotes L. monocytogenes translocation across the mucosal membrane (Drolia et al., 2018); therefore, the BLP strains (LbcLAP^(Lin) and LbcLAP^(Lm)) were tested in the in vitro transwell setup for their ability to traverse epithelial-barrier. Interestingly, none of the BLP strains showed any significant translocation while the L. monocytogenes WT strain as a control showed a significantly very high translocation (FIG. 2B). These data indicate probiotics' natural ability to maintain the epithelial barrier integrity possibly supersedes LAP-induced epithelial barrier dysfunction (Bron et al., 2017; Pagnini et al., 2010).

Next, we examined if these BLP strains could prevent L. monocytogenes interaction with the epithelial cells. BLP strain pre-exposed to Caco-2 cell line significantly lowered L. monocytogenes adhesion to (FIG. 2C) and translocation across the epithelial monolayer in transwell (FIG. 2D), while the LbcWT pre-exposure did not show any significant reduction in L. monocytogenes translocation. A plasmid-vector control strain without the lap insert (LbcWT^(VC)) produced similar results as LbcWT, thus dismissing any extraneous anti-listerial effects that could be contributed by the virgin plasmid. In addition, none of the probiotic strains produced any anti-listerial compounds analyzed by the agar well-diffusion assay (FIG. 3C) thus ruled out the involvement of any bacteriocin-like inhibitory substance. Next, we hypothesized that the BLP-mediated inhibition of L. monocytogenes interaction with the epithelial cells could be facilitated by direct binding of L. monocytogenes cells to BLP since BLP expresses LAP, and the LAP has a natural affinity towards its own surface (Burkholder et al., 2009; Jagadeesan et al., 2010). Therefore, we examined the interaction between BLP and L. monocytogenes cells, if any, in a suspension culture. Using a Listeria-specific immunomagnetic bead (IMB; Invitrogen) capture system, we showed that L. monocytogenes WT bound strongly with the BLP cells, while a significantly reduced level with the LbcWT suggesting that BLP interaction (aggregation) with L. monocytogenes was mediated by the LAP (FIG. 2E). Collectively, these data suggest that pre-occupation of the epithelial surface by LAP-expressing BLP can competitively exclude L. monocytogenes from interacting with the epithelial cells.

The prophylactic effect of BLP feeding on listeriosis in mice was investigated using 8-10 weeks old female A/J mice that are highly sensitive to listeriosis (Czuprynski et al., 2003) in four experimental trials conducted over 5 years. Before the mice feeding experiment, probiotics survival in the simulated gastric fluid (SGF) and simulated intestinal fluid I (SIF-I) and II (SIF-II) were ensured by plate counting (FIGS. 3D-3F). Live/dead staining using carboxyfluorescein diacetate succinimidyl ester (cFDA) and propidium iodide (PI) also confirmed probiotics survival in gastric fluids (FIG. 3G) and Western blot showed LAP expression on BLP strains while grown in SIF-II (FIG. 3H).

Freshly grown probiotics bacteria were supplied daily in 50 ml drinking water per mouse (probiotic viability was maintained at about 4×10⁹ CFU/ml) for 10 days before an oral challenge with L. monocytogenes F4244 (serovar 4b) strain (5×10⁸ CFU/mouse) (FIG. 4A). All probiotic-fed animals maintained a constant body weight during the entire study, even after the challenge with L. monocytogenes strain on day 10. However, the animals that did not receive any probiotics, but were challenged with L. monocytogenes lost >15% body weight (FIG. 4B). BLP-fed mice appeared healthy and continued to feed and drink even after L. monocytogenes challenge, while the control animals without any probiotics or animals receiving the LbcWT but were challenged with L. monocytogenes, appeared ill (FIG. 5). The sick animals displayed ruffled hair, recumbency, reduced responsiveness to external stimuli, and reduced feed intake.

Animals were sacrificed at 24 and 48 h post-infection (pi) in Trial 1 (n=60) and after 48 h pi in Trial 2 (n=30). L. monocytogenes counts in the liver, spleen, MLN, kidneys, blood, intestine, and feces were determined (FIGS. 4E-4K). Irrespective of the tissues or organs examined, the LbcWT feeding resulted in a meager 0-1 log CFU/mouse reduction of L. monocytogenes counts. (FIG. 4E-4K). Astonishingly, the BLP-fed mice showed a reduction of L. monocytogenes counts by 1.5-3 log (up to 99.9%) after 24 h and 3.5-5 log (up to 99.999%) 48 h pi in liver and spleen of half the test population while L. monocytogenes was undetectable in the remainder of mice. L. monocytogenes was also undetectable in blood and the kidney of BLP-fed mice (FIG. 4H, 4I). No background Listeria was detected from any mice that received only the probiotics or no probiotics at all.

Intestinal colonization and fecal shedding of L. monocytogenes in probiotic-fed mice were also examined. BLP feeding also significantly reduced L. monocytogenes colonization in the intestine (FIG. 4J) and fecal shedding (FIG. 4K), compared with that of the LbcWT-fed mice. Total lactic acid bacteria (LAB) counts in the intestine, and feces of mice were relatively constant irrespective of the bacterial treatments (FIG. 4C). While the LbcWT and the BLP colonization in the gut (intestine and feces) were maintained at about 4.5 log and 5.5 log CFU/mouse, respectively, when intestinal samples were analyzed 48 h pi (FIG. 4D). Collectively, these data demonstrate that bioengineered probiotics were maintained in the intestine of mice for the duration of the study and protected mice from the extra-intestinal spread of L. monocytogenes.

Bioengineered Probiotics Protected Gut Barrier Integrity.

We have demonstrated in previous studies that LAP induces epithelial barrier dysfunction and promotes of L. monocytogenes translocation in both in vitro cell culture (Burkholder and Bhunia, 2010; Kim and Bhunia, 2013) and in vivo mouse model (Drolia et al., 2018). Countering this effect, probiotics are known to maintain epithelial tight junction integrity through the immunomodulatory effect which is orchestrated by NF-kB and the secretion of proinflammatory cytokines such as TNFα, IL-1β, IL-6 (Ahrne and Hagslatt, 2011; Pagnini et al., 2010; Zareie et al., 2006). First, we examined if the BLP were able to maintain the intestinal epithelial integrity thereby preventing L. monocytogenes translocation to extra-intestinal sites. Epithelial permeability was assessed in Caco-2 cell monolayers by monitoring the diffusion of FD4 from apical to basolateral side (FIG. 6A), and by measuring transepithelial electrical resistance (TEER) in a trans-well set up (FIG. 6B). Caco-2 cells pre-treated with or without LbcWT for 24 h followed by L. monocytogenes challenge for 2 h resulted in a very high FD4 permeability (61-64% change) compared to the control, while LbcLAP^(Lm) or LbcLAP^(Lm), pre-treatment for 24 h substantially reduced FD4 translocation following L. monocytogenes infection resulting in only 22% change compared to the untreated control (FIG. 6A). Likewise, BLP (LbcLAP^(Lm) or LbcLAP^(Lin)) pre-exposure followed by L. monocytogenes caused only 2.3-6.9% change in Caco-2 TEER values while L. monocytogenes alone caused a 17% change (FIG. 6B).]

Gut permeability was also assessed in BLP-fed mice by monitoring the levels of FD4 in serum and urine (Drolia et al., 2018). BLP-fed mice challenged with L. monocytogenes were orally administered with the FD4 4-5 h prior to sacrifice (Drolia et al., 2018). Animals (FIGS. 2A-2F) that did not receive any probiotics, but were challenged with L. monocytogenes had an FD4 level at 3.5±0.3 μg/ml in sera (FIG. 6C) and 83.3±13.5 μg/ml in urine (FIG. 6D). In LbcWT-fed animals, the FD4 levels in sera and urine were 1.82 μg/ml and 18.0 μg/ml, respectively, while the FD4 levels were 2.6 μg/ml and 46.9 μg/ml, after L. monocytogenes challenge. In contrast, the FD4 levels in both sera and urine in animals that received BLP with or without L. monocytogenes challenge had substantially lower FD4 (about 1.9 μg/ml in sera and 13.2-22.4 μg/ml in urine) equivalent to that of the control mice that did not receive either bacterium. These data clearly demonstrate that probiotics especially the LAP-expressing BP were able to attenuate L. monocytogenes-mediated epithelial dysfunction in a mouse model. Transmission electron microscopy (TEM) also showed epithelial tight junction opening in ileal tissue sections of mice fed with Lm but not with bioengineered probiotic followed by Lm as examined by transmission electron microscopy (TEM).

LAP-mediated epithelial barrier dysfunction is governed by mislocalization of epithelial junction proteins, claudin-1, occludin, and E-cadherin (Drolia et al., 2018). In Caco-2 cells, L. monocytogenes WT alone or Caco-2 pre-treated with probiotics significantly decreased membrane localization of claudin-1, occludin, and E-cadherin analyzed by Western blotting (FIG. 7A) and the corresponding transcripts in agreement with our previous study (Drolia et al., 2018). Pre-treatment with the BLP prevented L. monocytogenes-mediated claudin-1, occludin and E-cadherin mislocalization. Confocal immunofluorescence microscopy confirmed destabilization of the cell junction architecture as ZO-1 disruption by L. monocytogenes was pronounced with a discontinuous cell membrane boundary, which was not seen when the Caco-2 cells were pre-treated with the BLP (FIG. 7B). E-cadherin and claudin were sequestered in L. monocytogenes-treated Caco-2 cell cytoplasm but was not seen in the BLP pre-treated cells (FIG. 7B) Similar results were seen in mice ilea where BLP-fed mice maintained intact claudin-1, occludin and E-cadherin even after challenging with L. monocytogenes (FIG. 7C). Taken together, these data indicate that both BLP strains, but not the wild-type probiotics maintained the tight junction integrity and thus prevented L. monocytogenes movement across the epithelial cell barrier.

Ileal Tissue Histology and Innate Immune Response to Bioengineered Probiotic.

Ileal tissue sections from mice collected at 48 h pi were first examined for inflammation after hematoxylin and eosin staining. Overall, the inflammation due to L. monocytogenes infection in 48 h pi was subtle (FIGS. 8A-8B). Ileal tissues of untreated control mice had cylindrical villi with relatively few lymphocytes in the lamina propria. Goblet cells (10% of the villous epithelium) and Paneth cells were mostly confined to the intestinal crypts. The remaining cells of the villous epithelium were enterocytes. The mice that did not receive any probiotics, but were challenged with L. monocytogenes had mildly increased numbers of goblet cells at 24 h than the mice received only the LbcWT (FIGS. 8C-8D) in the villous epithelium with neutrophil infiltration at the base of the villous lamina propria. The BLP-fed mice challenged with L. monocytogenes showed the highest average histomorphological score, and higher goblet cell counts; however, the enterocytes remained intact with no sign of apparent necrosis (FIGS. 8A-8D).

Mammalian Hsp60 activates innate immune response (Chen et al., 1999; Pockley, 2003). Earlier, we observed that L. monocytogenes infection induced membrane Hsp60 expression, which subsequently facilitated enhanced LAP-mediated L. monocytogenes translocation (Burkholder and Bhunia, 2010; Drolia et al., 2018) by breaching an innate immune system in the mouse. Therefore, we examined the Hsp60 expression in the mouse ileal sections. Hsp60 expression was pronounced and uniformly distributed on the villous epithelial cells of mice that did not receive any probiotics but challenged with L. monocytogenes for 48 h (FIG. 8E). Expression of Hsp60 was lower in all probiotic-fed mice but enhanced when challenged with L. monocytogenes. A similar trend was observed when the levels of hsppd1 (hsp60) transcripts were analyzed in the ileal tissue samples (FIG. 8F). These data demonstrate that BLP was able to dampen the Hsp60 expression, however, after the L. monocytogenes challenge, Hsp60 expression increased in epithelial cells, which may help the host cells to defend against the infection through a mechanism which requires further investigation.

Immunomodulatory and Anti-Inflammatory Effects of Probiotic Feeding in Mice.

Probiotic bacteria modulate the immune response and maintain immune homeostasis via activation of NF-κB and production of epithelial TNF-α (Cross, 2002; Pagnini et al., 2010). Moreover, both TNF-α and IL-6 increase epithelial barrier permeability through activation of NF-κB (Ma et al., 2004). Earlier, we have shown that LAP of L. monocytogenes stimulates NF-κB, produces epithelial TNF-α and IL-6 and increases epithelial permeability by dysregulating epithelial junctional proteins (Drolia et al., 2018). Here, we observed that the BLP strains lowered approximately 2-fold NF-κB activity in a Luciferase reporter RAW (murine macrophage) cell line compared to that of L. monocytogenes WT or LPS-treated control cells (FIG. 9A). Confocal immunostaining of ileal tissue samples also showed increased translocation of P-p65 and p65 into the nucleus by L. monocytogenes WT but reduced levels in BLP-pretreated mice indicating that BLP stimulates NF-κB (FIG. 9B). Furthermore, TNF-α and IL-6 levels were increased substantially in the murine ileal tissue extracts (FIGS. 9C-9D) from L. monocytogenes infected mice without probiotic feeding, while the levels were equivalent to that of the uninfected controls when fed with the BLP strains.

To assess the state of systemic immune response in BLP-fed mice, levels of several cytokines in the pooled sera from the three animals within each treatment group were analyzed using a semi-quantitative immunoblot array. Strong IL-6 and MCP-1 response were observed in animals that were infected with L. monocytogenes without any pre-exposure to probiotics; however, both the wild-type probiotic and BLP exposure significantly dampened these cytokines in L. monocytogenes-infected mice. In contrast, levels of G-CSF was very high in sera after L. monocytogenes challenge, irrespective of the probiotics used. Serum TNF-α level was undetectable irrespective of the treatments, possibly the array could not detect trace amounts.

Probiotic bacteria also influenced cellular immune response to L. monocytogenes infection as seen in the spleen by flow cytometry and cytology. Among the splenic CD4⁺ (FIG. 9E) and CD8α⁺ (FIG. 9F) T cell populations, only CD8α⁺ counts showed a strong response in mice challenged with L. monocytogenes in the absence of any probiotic, while the counts were lower in BLP-primed mice following L. monocytogenes challenge. L. monocytogenes infection also increased splenic CD11c⁺ (dendritic cell) counts irrespective of the type of probiotics used (FIG. 9G).

Cytological imprints from splenic cross-sections did not reveal any obvious lymphoid hyperplasia in control animals while L. monocytogenes infection resulted in significant neutrophil and macrophage infiltration (FIG. 9I). No cytological evidence of inflammation was apparent in any probiotic-fed animals. Interestingly, BLP-fed animals followed by L. monocytogenes challenge showed moderate-to-marked inflammation with increased infiltration of macrophages and neutrophils (FIG. 9I). Blinded cytology scoring also confirmed such observation (FIG. 9H). The immunomodulatory and ant-inflammatory effects of probiotics and reduced Listeria counts in spleen (FIG. 4F) strongly suggest that BLP positively influenced cellular immune response for efficient clearance of L. monocytogenes from extra-intestinal sites.

Immunomodulatory effect of probiotic was also assessed in ileal tissues by immunostaining of ileal tissue sections with T-cell markers, anti-CD3⁺; anti-CD8⁺ and CD4⁺ FoxP3⁺ antibodies which revealed significant differences in total T-cell counts between the control and bioengineered probiotic-fed mice as shown in FIGS. 10A-10D. Bioengineered probiotics (BLP) enhanced the regulatory T cell (CD4⁺ FoxP3⁺) response while cytotoxic (CD8⁺) cell counts were low. This suggests that bioengineered probiotic was able to prime the immune system, which possibly helped eliminate invaded L. monocytogenes cells and maintain tight junction integrity to prevent bacterial passage or increased clearance of pathogens that were able to cross the epithelial barrier, especially from the BLP-fed mice where most animals showed reduced systemic infection (FIGS. 4A-4K).

FIG. 11 shows survival of mice (A/J strain) supplied with or without probiotics for ten days in drinking water followed by oral infection with L. monocytogens (n=at least 10 per group). Mice fed with Lactobacillus casei (probiotics) expressing the LAP protein (LbcLAPLin) showed significantly (**P<0.01, Kaplan-Meier log-rank test) higher survival compared to that of LbcWT.

We also measured the levels of secretory IgA (sIgA) in the ileal mucus samples, and the total sIgA levels for probiotic-fed mice were considerably higher than the control animals; however, there were no differences in LbcWT and the BLP-fed mice indicating probiotics natural ability to induce sIgA production (Bakker-Zierikzee et al., 2006). We also could not detect any LAP-specific antibody in the pooled mice sera from either LbcWT or BLP-fed mice. This provides evidence against submucosal translocation of LAP-expressing probiotics, which is in agreement with Caco-2 transwell data (FIG. 2B). However, the sera from probiotic-fed mice that were challenged with L. monocytogenes for 48 h exhibited a very faint antibody reaction with LAP, for which there is no specific explanation. Nevertheless, these data demonstrate that probiotics-mediated humoral immune response, especially the sIgA may also affect L. monocytogenes interaction with intestinal epithelial cells during the early phase of infection (Mantis et al., 2011).

Bioengineered probiotic feeding also increased survival of mice after L. monocytogenes challenge. Mice were fed with probiotic bacteria for 10 days and then challenged with lethal dosage of L. monocytogenes (2×10⁹ CFU/mouse). Mice survival was examined over 10 days. Over 82% mice from bioengineered probiotic (LbcLAPLin)-fed mice group survived while 60% and 50% mice survived that received LbcWT and no probiotic control (naïve), respectively (FIG. 11). This study clearly indicates that LAP-expressing bioengineered probiotic bacteria can prevent fatal infection caused by L. monocytogenes.

Listeria monocytogenes is an invasive opportunistic intracellular human pathogen. It is ubiquitous and is transmitted primarily through food resulting in numerous fatal and costly outbreaks that are associated with consumption of contaminated cheese, ice cream, fish, ready-to-eat meats, and produce (cantaloupe, apples, sprouts, spinach). Besides pregnancy, immune suppressed conditions in the elderly, and malignancy, organ transplant and HIV-AIDs patients are also highly vulnerable (Schuchat et al., 1991). The case fatality rate of listeriosis is 19%. Currently, there is no preventive vaccine against listeriosis except for general precautionary guidelines outlined by the CDC that include thorough cooking of meat, safe food handling practices and avoidance of the FDA designated high-risk foods, such as frankfurters, soft cheeses made with unpasteurized milk, pate, and smoked fish. Therefore, prophylactic intervention strategies for the high-risk population from listeriosis would have a greater public health impact. One of the promising alternatives to the use of antibiotics in prophylaxis or therapy is the utilization of probiotic microbes (Amalaradjou and Bhunia, 2012; Sanders et al., 2014). Probiotic microbes also produce metabolites and macromolecules promoting gut health by modifying cytokine production and enhancing gut barrier function (Bron et al., 2017; Cho et al., 2014; Salminen et al., 2010). Probiotic microbes can prevent/alleviate chronic inflammatory bowel disease, colorectal cancer, metabolic disorders and obesity, and osteoporosis (Amalaradjou and Bhunia, 2012; Azcarate-Peril et al., 2011; Ly et al., 2011). Probiotics are also used in pre-term neonates to allow early colonization with beneficial microbes (Deshpande et al., 2011), and increased sIgA secretion in the gut (Bakker-Zierikzee et al., 2006). Among the different probiotic bacteria used, Lactobacillus species is most common because of their ability to survive, colonize and modulate the immune system in the gut, and are generally safe (Amalaradjou and Bhunia, 2012). Earlier, Con et al. (Con et al., 2007) showed that bacteriocin producing Lactobacilli could control listeriosis in a mouse model. However, probiotics approach has been ineffective or has had limited success against listeriosis (Culligan et al., 2009; Koo et al., 2012). To overcome such limitations, we bioengineered a probiotic Lactobacillus casei strain to prevent Listeria interaction with the epithelial cells in the intestinal tract and subsequent extra-intestinal dissemination.

We have shown previously that LAP plays an important role during early-phase of infection (within 24-48 h), promoting translocation of L. monocytogenes across the epithelium in mice (Burkholder et al., 2009; Drolia et al., 2018). The LAP lacks a leader sequence thus the bacterial secretory system, SecA2 helps LAP to secrete to the extracellular milieu and for surface display (Burkholder et al., 2009; Mishra et al., 2011). The LAP from L. monocytogenes bears high sequence similarity to the LAP from L. innocua (non-pathogen) and the L. innocua LAP is unable to re-associate on its own surface possibly due to the lack of a surface anchoring molecule (Jagadeesan et al., 2011; Jagadeesan et al., 2010). This defect probably prevents L. innocua from translocating through the epithelial paracellular route (Burkholder and Bhunia, 2010). Interestingly, the L. innocua LAP fully restored epithelial translocation ability in a lap-deficient L. monocytogenes strain in a cell culture model (this study). This raised an intriguing question; can the LAP from L. innocua expressed on probiotic Lactobacillus prevent listeriosis in a mouse model? A/J mice are highly sensitive to listeriosis due to C5 complement deficiency (Czuprynski et al., 2003; Jagannath et al., 2000); therefore, these animals should be ideal for studying the prophylactic effect of BLP against listeriosis.

Incredibly, both bioengineered Lactobacillus casei expressing LAP″ or LAP^(Lin) were able to prevent L. monocytogenes dissemination substantially (up to 5 log or 99.999% reduction) to extra-intestinal tissues and organs and the mice appeared healthy when sacrificed at 48 h pi. Both LbcWT and BLP were maintained in the gut during the 10 days feeding trials and they were not detected in any extra-intestinal tissues upon sacrifice implying that either they did not cross the intestinal barrier or the translocated BLP were cleared immediately by the local immune system. Blood sera also did not reveal any noticeable LAP-specific antibody response suggesting that the LAP antigen may not have disseminated systemically.

Two plausible mechanisms for BLP-mediated protection are postulated: (i) Prevention of L. monocytogenes interaction with the intestinal epithelial cells by BLP via preoccupation of the intestinal niche, and subsequent binding to L. monocytogenes, and (ii) activation of the immune system for increased clearance of the translocated pathogens. Our results also indicate that the BLP prevented L. monocytogenes dissemination by maintaining epithelial tight junction integrity as the preservation of the cytoskeleton and tight junction barrier integrity is critical for modulating paracellular and transcellular bacterial diffusion (Pagnini et al., 2010; Zhou et al., 2010). Mislocalization of epithelial junctional proteins, occludin, claudin-1 and E-cadherin in the ileal tissues of the mice was evident in L. monocytogenes infected mice and the LbcWT-fed groups, while the cell junction architecture remained intact in animals fed with BLP followed by L. monocytogenes infection.

Probiotic bacteria exert immunomodulatory effect (Ng et al., 2009) and promote gut health through stimulation of epithelial innate immunity by stimulating local production of TNF and activation of NF-kB (Pagnini et al., 2010). In agreement with a previous report (Rothe et al., 1993), here we also observed L. monocytogenes mediated high levels of TNF-α and IL-6 in the ileal tissue homogenates and IL-6 level in the sera. Indeed, activation of NF-kB results in elevated levels of TNF-α and IL-6, which facilitate gut epithelial barrier destabilization (Drolia et al., 2018; Ma et al., 2004). In our previous report, LAP induced epithelial IL-6 and TNF-α production during L. monocytogenes infection through activation of NF-κB (Drolia et al., 2018), in this study, LAP-expressing BLP was able to dampen L. monocytogenes-mediated proinflammatory cytokine production despite moderate activation of NF-kB. This suggests, perhaps BLP helped maintain epithelial immune homeostasis thus was able to counteract L. monocytogenes mediated inflammatory response. During innate immunity, epithelial cells and monocytes secrete IL-6 when stimulated by pathogen-associated molecular patterns (PAMPS) on specific pathogens that are recognized by pattern recognition receptors (PRR) including Toll-like receptors (TLRs) similar to LAP-Hsp60 interaction (Drolia et al., 2018). Previous in vitro studies using RAW264.7 macrophages exposed to cell wall extracts of Bifidobacterium adolescentis, B. longum, and Lactobacillus salivarius Ren enhanced phagocytic activity via increased production of IL-6 and TNF-α (Zhu et al., 2011). Oral gavage of mice with L. acidophilus and B. bifidum showed increased reactive oxygen intermediates production and enhanced phagocytic activity in macrophages (Deepti and Vinod, 2014). A long-term consumption of probiotic has shown to enhance innate immunity and production of IL-1, IL-1β, IL-6, IL-10, IL-12, IL-18, INF-γ, and TNF-α by monocytes and DC (Cross, 2002; Niers et al., 2005).

Cell-mediated immunity especially the CD8⁺ T-cell response is critical for controlling systemic L. monocytogenes infection (Huleatt et al., 2001). Here we also observed increased cell counts with CD8α⁺ marker in spleen in the L. monocytogenes infected control group 48 h pi, while the opposite trend in BLP-fed animals. CD8α⁺ cells represent both cytotoxic T-cells and a subset of dendritic cells, and both are requisite for efficient splenic infiltration during intravenous administration of L. monocytogenes in mice (Edelson et al., 2011). The concomitant marked increase in neutrophils, macrophages and dendritic cells (CD11c⁺ and spleen cytology data) in the spleen with L. monocytogenes infection in the BP-fed groups above the control infection group suggests that perhaps the BP strains serve to prime the innate immune system. As such, increased phagocyte infiltration may lead ultimately to improved pathogen clearance without the need for CD8⁺ T-cells. Prophylactic oral administration of L. casei CRL431 has positively influenced neutrophil response to a nasally inoculated Streptococcus pneumoniae, demonstrating a potentially important link in mucosal immunity between different organ systems (Villena et al., 2005). The total splenic CD4⁺ T cell population did not change in our study, but other Tx subtypes that may contribute to the overall differential immune response were not measured. Probiotic microbe-induced sIgA response in ileal mucus in mice pre-exposed to both LbcWT and the BLP, akin to previous studies (Bakker-Zierikzee et al., 2006; Sakai et al., 2014) suggesting that the probiotic bacteria stimulate mucosal immune response (Mantis et al., 2011) against L. monocytogenes.

In summary, the wild-type probiotic strains tested are generally ineffective against L. monocytogenes infection (Koo et al., 2012); therefore, the bioengineered probiotic strains were made to prevent listeriosis in a mouse model. Our study has demonstrated that the LAP-expressing bioengineered Lactobacillus casei, including the LAP from a nonpathogenic Listeria, protected mice from L. monocytogenes infection through colonization resistance, maintenance of gut permeability and tight junction stability, and immunomodulation. Such bioengineered strain can potentially prevent listeriosis in high-risk populations and at the same time promote health benefits inherent to probiotic lactobacilli.

Materials and Methods

Bacterial Strains, Plasmids, and Growth Conditions.

All Listeria species were grown in tryptic soy broth containing 0.5% yeast extract (TSBYE; Becton Dickinson, Sparks, Md.) or Luria-Bertani broth (LB, 0.5% NaCl, 1% tryptone peptone, and 0.5% yeast extract) at 37° C. for 16 to 18 h. Probiotic bacteria were cultured in deMan Rogosa Sharpe broth (MRS, Becton Dickinson) at 37° C. for 18-20 h. Lactobacillus casei ATCC 344 wild-type (LbcWT) (a gift from Mike Miller, University of Illinois, Urbana) was used as a host to express LAP from L. innocua and L. monocytogenes. To recover this strain from fecal and intestinal samples during the animal study, a vancomycin-resistant strain of L. casei was selected by sequentially culturing the bacterium in increasing concentrations of vancomycin (300 μg/ml). Recombinant L. paracasei was grown under anaerobic conditions at 37° C. with erythromycin (2 μg/mL). The lap-deficient mutant L. monocytogenes strain KB208 was grown in TSBYE with erythromycin (10 μg/mL) at 42° C. KB208 expressing L. innocua LAP was grown in TSBYE with erythromycin (5 μg/mL) and chloramphenicol (7 μg/mL) at 42° C.

Generation of Bioengineered Lactobacilli Expressing LAP from L. innocua and L. monocytogenes.

The entire lap gene (2.6 kb) from L. innocua was amplified by PCR and inserted into pLP401T (Pouwels et al., 2001) and electrotransformed into L. casei ATCC 334 designated LbcLAP^(Lin) (L. casei AKB907) as described before (Koo et al., 2012). Likewise, lap gene from L. monocytogenes was expressed in L. casei designated LbcLAP^(Lm) (AKB906). The bioengineered strains were maintained in MRS broth containing erythromycin (2 μg/ml) under anaerobic conditions at 37° C. The L. innocua lap gene was cloned into pMGS101, electrotransformed into KB208, and designated LmKB208LAP^(Lin). To induce LAP expression, the bioengineered L. casei strains, were grown in modified MRS (1% w/v protease peptone, 0.5% w/v yeast extract, 0.2% w/v meat extract, 0.1% v/v Tween 80, 37 mM C₂H₃NaO₂, 0.8 mM MgSO₄, 0.24 mM MnSO₄, 8.8 mM C₆H₁₄N₂O₇ in 0.1 M potassium phosphate buffer, pH 7.0) supplemented with mannitol (1% w/v). LAP expression was verified by Western blotting, ELISA and immunofluorescence staining using anti-LAP mAb (Koo et al., 2012).

Growth Characteristics of Recombinant Probiotics in Artificial Gastrointestinal Fluids.

The survival of probiotics exposed sequentially to the simulated gastrointestinal fluid (SGF) and simulated intestinal fluid (SIF-I and SIF-II), to simulate gastric phase, enteric phase 1 and enteric phase 2, respectively), over 6 h (2 h for each step) period was monitored (Buriti et al., 2010). SGF contained pepsin (3 g/L) and lipase (0.9 mg/L) (Sigma-Aldrich), pH 1.2-1.5 (adjusted using IN HCl). Both SIF-I and SIF-II contained bile (bovine bile; 10 g/L, Sigma-Aldrich) and porcine pancreatin (1 g/L; Sigma-Aldrich), but SIF-I pH was 4.3-5.2 and SIF-II pH 6.7-7.5 (adjusted using alkaline solution; 150 ml of 1 N NaOH, 14 g of PO₄H₂Na.2H₂O and deionized water up to 1 L). Overnight cultures of wild-type or BP were washed and resuspended in SGF (100 ml) and incubated at 37° C., with agitation (150 rpm for 2 h) (gastric phase), and bacterial counts were monitored every 30 min for 2 h. The cells from SGF were pelleted down and transferred sequentially into SIF-I, and SIF-II, incubated each at 37° C. for 2 h to simulate the initial and final phases of intestinal digestion. Probiotics counts were enumerated on MRS plates and the assay was repeated three times with duplicate samples. Viability was also verified by performing live and dead staining using cFDA-SE (carboxyfluorescein diacetate succinimidyl ester, 50 μM) and PI (propidium iodide, 30 μM) as described (Lee et al., 2004). Levels of LAP expression in probiotic cultures during exposure to SGF and SIF were also monitored by immunofluorescence staining and Western blotting using anti-LAP mAb. BP survival in water is also monitored to ensure probiotics viability during animal feeding in a 24-h cycle.

Inhibition of L. monocytogenes Adhesion, Invasion and Paracellular Translocation by BP.

The ability of LbcWT and BP (LbcLAP^(Lin) and LbcLAP^(Lm)) to inhibit L. monocytogenes adhesion, invasion, and translocation through Caco-2 cell monolayers was investigated as before (Koo et al., 2012). BLP strains were added to each well (MOE 10) and incubated for 24 h. Unbound bacteria were removed by washing with Dulbecco's modified Eagles' medium containing 10% fetal calf serum (D10F), and L. monocytogenes was added (MOI 10) and incubated for 1 h to determine inhibition of adhesion and invasion. The cell monolayers were then washed three times and adherent bacteria were released by Triton-X 100 treatment and plated. To determine intracellular bacteria, the cell monolayers were treated with gentamycin (50 μg/mL) for 1 h before Triton-X treatment. As a vector control, the recombinant LbcVecLAP⁻ strain was used.

Bacterial translocation through epithelial barrier was assayed as before (Burkholder and Bhunia, 2010). Briefly, Caco-2 cells were grown on transwell filter inserts (4-μm pore filter; Corning, Lowell, Mass.) for 10-12 days to reach confluence. Bacteria were added to the apical well of the insert and incubated for 2 h. Liquid from the basal well was removed, serially diluted, and distributed onto TSA-YE agar plates for enumeration. TEER of Caco-2 cells before and after treatment was measured using a Millicell ERS system (Millipore, Billerica, Mass.). For epithelial permeability assay, 3-5 kDa FITC-Dextran (FD4; Sigma) was added to the well (apical side) and translocation of FD4 to the basal side was monitored by a spectrophotometer (Spectramax).

The Interaction Between Lactobacilli and L. monocytogenes Cells.

L. monocytogenes F4244, L. innocua F4248, LbcWT, LbcLAP^(Lm), and LbcLAP^(Lin) were cultured for 16-18 h at 37° C. in TSBYE, MRS, or MRS supplemented with 2 μg/ml erythromycin broth, respectively (see section 3.2.1). All cultures were pelleted by centrifugation at 8000×g for 3 min and washed with sterile PBS. All cellular concentrations were serially diluted to obtain a cell concentration of 10⁶ cfu/ml. L. monocytogenes or L. innocua were allowed to interact with the individual probiotic strains (LbcWT, LbcLAP^(Lm), or LbcLAP^(Lin)) at a 1:1 concentration in sterile PBS for 1 h at room temperature with constant agitation on Lab Doctor Revolver (MidSci, Valley Park, Mo.). Anti-Listerial magnetic Dynabeads (Cat. No. 71006, Thermofischer Scientific) were used to capture and separate L. monocytogenes and L. innocua from unbound probiotics. Briefly, 20 μl/ml of bead slurry was added to the bacterial mixtures and allowed to interact for 10 min at room temperature with constant agitation. Beads were magnetically separated and washed with sterile PBS-T (0.1%) 3 times (10 min each wash) with constant agitation. Beads were serially diluted and plated on MOX (Neogen) and MRS agar (BD) for enumeration of Listeria and probiotics, respectively.

Mouse Bioassay.

Female mice (A/J: 8-10 weeks of age; n=88) were purchased from Jackson Laboratories (Bar Harbor, Me.). The animal bioassay procedure was approved by the Purdue University Animal Care and Use Committee (1201000595). Upon arrival, mice (2/cage) were housed in a cage that had a solid stainless divider to keep them separated. Shepherd's™ ALPHA-Dri® (alpha cellulose) was used for bedding. Animals were provided ad lib feed (Rodent Diet 5001, LabDiet, Brentwood, Mo.) and sterile deionized water, and acclimatized for 5 days before the experiment. A cycle of 12 h artificial light and 12 h darkness was maintained. Relative humidity was 50-60% and the temperature was 20-25° C. Mice were randomly assigned to eight different groups. Fresh preparation of probiotics was supplied daily with sterile deionized water at ˜9×10⁹ CFU/ml for 10 days. Control animals received only water. Probiotic colonization in the gut was monitored daily by analyzing fecal counts of probiotics on agar plates. For challenge experiment, mice received oral gavage of L. monocytogenes F4244 (WT) at a concentration of 5-8.8×10⁸ CFU/mouse using a feeding tube (Popper) and control mice received PBS (Burkholder et al., 2009). Animals were observed for clinical signs, such as ruffled hair, movement and recumbency, and their feeding and drinking habits.

Mice were euthanized by CO₂ asphyxiation at 24 and 48 h pi, and intestine (duodenum, jejunum ileum, cecum, and colon), MLN, spleen, liver, kidney, and blood from the heart were aseptically collected. Feces were collected from each mouse from the time of infection to sacrifice. In some cases, intestinal sections were treated with gentamycin (100 μg/ml) for 2 h to kill extracellular bacteria. Organs/tissues were homogenized using a tissue homogenizer (Cole Parmer, Vernon Hills, Ill.) in 0.5 ml (blood), 4 ml (spleen, kidney, lungs) or 9 ml (feces, intestine, liver) of PBS. MRS agar (Neogen, Lansing, Mich.) containing vancomycin (300 μg/ml) was used for enumeration of LbcWT, and MRS agar containing erythromycin (2 μg/ml) was used for bioengineered strains. Modified Oxford medium (MOX; Oxoid, Basingstoke, Hampshire, UK) was used for enumeration of Listeria. A portion of the ileum (˜2 cm) was saved for histopathology, immunohistochemistry, qRT-PCR and other experiments. The gut mucosa was collected from an 8-cm section of ileum for sIgA analysis (Haneberg et al., 1994).

Gut Permeability Assay.

Four to five hour before sacrifice, animals were orally gavaged with 100 μl of FD4 (3 mg/ml; Sigma). Urine voluntarily excreted during euthanasia, was collected from the bag, and blood was collected by cardiac puncture. Sera and urine were appropriately diluted and assayed for FD4 by measuring in a spectrophotometer as described (Condette et al., 2014).

Cytokine Analysis.

Caco-2 monolayers (12 days of incubation) were formed in 12 well plates. Probiotics were introduced to the monolayer at an MOE of 10 and incubated for 24 h. The monolayers were challenged with L. monocytogenes (MOE 10) or LPS free purified rLAP (1 mg/ml) for 4 h (Drolia et al., 2018). Culture supernatants were collected and tested for IL-6 and TNF-α content using ELISA kits (Raybiotech ELH-IL6 and ELH-TNF-α). For mouse tissue, IL-6 and TNF-α, mouse-specific ELISA kits (Ray Biotech ELM-TNF-α and ELM-IL6-CL) were used. Briefly, ileal tissue homogenates (100 μl) were incubated overnight (16 h). Primary antibodies specific to IL-6 or TNF-α and streptavidin conjugated secondary antibodies were incubated for 1 h and 45 min, respectively, at room temperature. The color was developed as instructed by the manufacturer.

Histopathology and Immunohistochemistry.

Mouse tissues were fixed in 4% paraformaldehyde and embedded in paraffin. Sections (5 μm thick) were stained with hematoxylin and eosin. Microscopic examination was performed by a board-certified veterinary pathologist and the interpretation was based on standard histopathological morphology. The pathologist was blinded to the treatment groups. The extent of mouse ileal lesions was determined by using a semi-quantitative method that included the amount of inflammatory infiltrate and percentage of goblet cells comprising the villous epithelium. A histomorphological scale for assessing inflammation in the lamina propria of the mucosa is provided as follows: 3, marked amounts (sheets of granulocytes expanding the width of the villous tip); 2, moderate amounts (sheets of granulocytes at the base of the villous); 1, mild amounts (multifocal scattering); and 0, none observed. To estimate percentage of goblet cells, following scale was used: 3, 50% or greater; 2, 25-50%; 1, 11-25%; and 0, <10%. The higher the score, the more likely there is an infection in the intestinal tissues. For CD3⁺ cell staining, paraffin-embedded intestinal thin sections pre-treated with heat-induced epitope retrieval solution and then blocked with Dako protein block according to manufacturer's instructions. Rabbit anti-human CD3 (1:500) used as the primary antibody followed by labeling with Dako labeled polymer. The stained slides were then scanned and analyzed using Aperio ScanScope and Aperio ImageScope software (v11.2.0.780) (Aperio Technologies, Vista, Calif.) established algorithms as described previously (Jones et al., 1993). For all CD3 immunostained slides, a semi-quantitative histochemical score (H score) was calculated by the formula: (3×% of strongly stained)+(2×% of moderately stained)+(% of weakly stained), giving a range of 0 to 300. This H score was adapted from the Aperio software (Webster and Dunstan, 2014).

Analysis of Tight Junction Protein Expression.

Membrane proteins from Caco-2 monolayers pre-exposed to the probiotic followed by L. monocytogenes infection were extracted and analyzed for tight junction protein expression. Western blot intensity measurements for membrane proteins using antibodies (Invitrogen) were determined as the ratio of the intensity of the tight junction protein (ZO-1, claudin-1, and occludin) and adherens junction protein (E-cadherin, β-catenin) bands to the integrated intensity of the β-actin band in the same sample. Additionally, membrane localization of the tight junction proteins was also analyzed by confocal immunofluorescence staining (Yu et al., 2012). Briefly, confluent Caco-2 monolayers were rinsed in PBS, fixed and permeabilized in 5% formaldehyde for 15 min. The Caco-2 monolayers were blocked using 5% normal goat serum in PBS for 1 h at room temperature and then incubated with the primary antibody to ZO-1, Claudin-1, and Occludin or E-cadherin-1 β-catenin (Invitrogen) at 37° C. overnight. The monolayers were then washed with PBS to remove unbound antibody and then incubated with the FITC-conjugated secondary antibody (Anti-mouse/Anti-rabbit IgG) for 1 h at room temperature. DAPI was used for nuclear staining. The monolayers were then washed and imaged using the Leica fluorescence microscope (Leica, model DMLB, Wetzlar, Germany) equipped with SPOT software (version 4.6.4.2, Diagnostic Instruments, Sterling Heights, Mich.).

RNA Preparation and Quantitative Reverse Transcription PCR.

Ileum sections (10-15 mm) of each mouse were collected and immediately transferred to 2.0 ml sterile, DNA/RNase-free cryovials containing RNAlater® (Ambion® by Life Technologies Corp., Carlsbad, Calif.), and stored at −80° C. until RNA extraction. Individual tissue samples were homogenized with TRIzol® reagent (Life Technologies Corp.) using a Tissue-Tearor (BioSpec Products, Inc., Bartlesville, Okla.), and total RNA was isolated with Direct-zol™ RNA MiniPrep Plus kit (Zymo Research Corp., Irvine, Calif.) according to the manufacturer's instructions. Total RNA aliquots were stored at −80° C. until cDNA synthesis. Concentration and quality of the RNA samples were assessed using Agilent 2100 Bioanalyzer (Agilent Technologies, Inc. Headquarters, CA). Quantitative RT-PCR was performed in two-step RT-PCR. Independent cDNA synthesis was performed for all samples (n=3 per group) starting from 100 ng of total RNA using SuperScript® VILO™ Master Mix (Invitrogen, Carlsbad, Calif.) according to the manufacturer's recommendations. Quantitative PCR was carried out in a StepOnePlus™ Real-Time PCR System (Applied Biosystems®, Foster City, Calif.) using Fast SYBR® Green Master Mix (Applied Biosystems®) according to the manufacturer's instructions. Primers for each target gene were selected from previous publications, in addition to GAPDH, chosen as an endogenous control. Three technical replicates for each target gene per sample were included in the qPCR assay. Means of triplicates were taken, and the relative amount of target mRNA was normalized to GAPDH ran in every assay. Relative quantification was evaluated using the Comparative Ct method (ΔΔCt), and fold difference (2^(−ΔΔCt)) was calculated between control (Control) and treatment groups (Schmittgen and Livak, 2008).

Spleen Cytology and Flow Cytometry.

Mouse splenocytes (n=3 per group) were harvested by mechanical disruption through a 40-micron mesh filter (Fisher Scientific Co., Pittsburgh, Pa.) into supplemented RPMI-1640 (modified Gibco, Life Technologies). Red blood cells were lysed using ACK Lysis buffer (Lonza, Allendale, N.J.). Cells were suspended in PBS with 1% BSA prior to immunostaining. All cells were blocked with anti-mouse CD16/32 (Affymetrix, Santa Clara, Calif.). Direct extracellular staining was performed. Intracellular staining for FoxP3 was performed using the Mouse Regulatory T-cell Staining Kit #2 (Affymetrix) according to the manufacturer's protocol. Fluorescence measurements were performed on an Accuri C6 flow cytometer (BD, Franklin Lakes, N.J.) and analyzed with the manufacture's software. All statistical analyses were performed using GraphPad (GraphPad Software Inc, La Jolla, Calif.). Unstained and isotype control cells were used for preliminary gating included for all subsequent analysis. CD4⁺ and CD8α⁺ data were collected by quadrant plot (n=3). CD11c⁺ data were obtained from detector histogram and averaged between tube 3 and tube 4 for each animal (n=3). [Mean population values were compared using two-way ANOVA to compare treatment groups with and without L. monocytogenes infection. Follow-up T-test analysis was performed to compare individual treatment pairs, one-tailed tests were performed only if the two-tailed test showed a significant difference.]

Antibody Response Analysis.

The gut mucosa was collected from an 8 cm section of ileum for analysis of sIgA. Briefly, 96-well polystyrene plates (HBX, Immulon, ThermoFisher) were coated with 100 μl of mucus (diluted 1:100 in carbonate coating buffer) and stored at 4° C. overnight. The wells were washed three times in PBST and then sequentially incubated with 1:100 anti-mouse IgA conjugated to HRP and QuantaBlu substrates (Fisher). The fluorescence intensity was measured (Ex: 340 nm; Em: 420 nm) using a Spectramax fluorescent plate reader (Gemini, Sunnyvale, Calif.). Similarly, Listeria-specific IgA levels were also estimated in the mucus samples using ELISA plates sensitized with an overnight culture of L. monocytogenes (Lm) F4244 (10⁷ CFU/well), followed by exposure to mucus samples from each of the animal group. The presence of Lm-specific IgA was then estimated using 1:100 anti-mouse IgA to HRP and QuantaBlu substrate as mentioned above. For analysis of serum IgG levels, 96-well plates were sensitized with serum samples (diluted 1:100 in carbonate coating buffer) at 4° C. overnight, and the IgG levels were detected using anti-mouse IgG (1:2000) and QuantaBlu. In addition, L. monocytogenes-specific IgG response was measured following sensitization with the F4244 (10⁷ CFU/well), followed by exposure to serum and anti-mouse IgG.

Those skilled in the art will recognize that numerous modifications can be made to the specific implementations described above. The implementations should not be limited to the particular limitations described. Other implementations may be possible.

While the inventions have been illustrated and described in detail in the drawings and foregoing description, the same is to be considered as illustrative and not restrictive in character, it being understood that only certain embodiments have been shown and described and that all changes and modifications that come within the spirit of the invention are desired to be protected.

It is intended that the scope of the present methods and apparatuses be defined by the following claims. However, it must be understood that this disclosure may be practiced otherwise than is specifically explained and illustrated without departing from its spirit or scope. It should be understood by those skilled in the art that various alternatives to the embodiments described herein may be employed in practicing the claims without departing from the spirit and scope as defined in the following claims.

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What is claimed is:
 1. A method for improving health and/or meat production of an animal comprising the step of adding an effective amount of Next Generation Bioengineered Probiotics (NGBP) to the feed of said animal.
 2. The method of claim 1, wherein said animal is selected from the group consisting of pig, sheep, goat, chicken, turkey, cat, dog, and cattle.
 3. The method of claim 1 wherein said NGBP is a reengineered bacteria expressing Listeria adhesion protein (LAP).
 4. The method of claim 1, wherein said NGBP is lyophilized.
 5. An animal feed supplement for improving health and/or meat production of an animal compromising Next Generation Bioengineered Probiotics (NGBP).
 6. The animal feed supplement according to claim 5, wherein said NGBP comprises a reengineered bacteria expressing Listeria adhesion protein (LAP).
 7. The animal feed supplement of claim 5, wherein said animal is selected from the group consisting of pig, sheep, goat, chicken, turkey, cat, dog, and cattle.
 8. The animal feed supplement of claim 5, wherein said animal feed supplement is lyophilized.
 9. A method for treating or preventing an inflammatory condition of a patient comprising the step of administering a therapeutically effective amount of Next Generation Bioengineered Probiotics (NGBP), together with one or more pharmaceutically acceptable carriers, diluents, and excipients, to the patient in need of relief from said inflammatory condition.
 10. The method of claim 9, wherein said inflammatory condition comprises Crohn's disease (CD), inflammatory Bowel Disease (IBD), and ulcerative colitis (UC), wherein intestinal mucosal cells express a high level of Hsp60.
 11. The method of claim 9 wherein said NGBP is a reengineered bacteria expressing Listeria adhesion protein (LAP).
 12. The method of claim 9 wherein said NGBP is administered orally.
 13. The method of claim 9 wherein said NGBP is lyophilized.
 14. A method to reduce or eliminate antibiotics used in an animal feed for improving animal health and/or meat production comprising the step of adding an effective amount of Next Generation Bioengineered Probiotics (NGBP) to the feed instead of an antibiotic.
 15. The method of claim 14, wherein said animal is selected from the group consisting of pig, sheep, goat, chicken, turkey, cat, dog, and cattle.
 16. The method of claim 14, wherein said NGBP is a reengineered bacteria expressing Listeria adhesion protein (LAP). 